Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010669.1 Corchorus capsularis cultivar CVL-1 contig10690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6367
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:3956 original size:33 final size:33

Alignment explanation


    Indices: 3919--4015  Score: 140
    Period size: 33  Copynumber: 2.9  Consensus size: 33

       3909 AGCACTAGTG

                    *            *           
       3919 ACCGGCCATGCGACTTGGAGAAGTCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                                   *       * 
       3952 ACCGGCCACGCGACTTGGAGATGCCCGGCCATC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                          *    *           
       3985 ACCGGCCACGCGACATGGACATGTCCGGCCA
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCA

       4016 CAACTGGCCA


Statistics
Matches: 57,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   57  1.00

ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

Done.