Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010671.1 Corchorus capsularis cultivar CVL-1 contig10692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2725
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:1192 original size:8 final size:8

Alignment explanation


    Indices: 1179--1212  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

       1169 CACCTTCTTG

                    
       1179 AAAAATTC
          1 AAAAATTC

                    
       1187 AAAAATTC
          1 AAAAATTC

                 *   
       1195 AGAAACTTC
          1 A-AAAATTC

                    
       1204 AAAAATTC
          1 AAAAATTC

             
       1212 A
          1 A

       1213 TAGCCGATTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC
Done.