Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010676.1 Corchorus capsularis cultivar CVL-1 contig10697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29269

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1988--2063
33
2.3
33
88
4
109
23
44
25
6
1.77
2012--2063
10
4.9
10
73
13
50
23
48
23
5
1.72
6275--6332
27
2.1
28
83
3
73
48
15
18
17
1.82
9007--9059
18
3.3
18
70
29
64
7
22
47
22
1.76
9007--9072
30
2.2
30
94
5
116
7
24
45
22
1.78
14883--14954
28
2.8
25
86
12
94
33
2
18
45
1.63
24034--24060
1
27.0
1
100
0
54
0
0
0
100
0.00
27764--27800
19
1.9
19
89
10
58
29
5
0
64
1.15
27967--28045
22
3.6
22
83
6
81
37
13
16
31
1.88
28061--28118
22
2.5
22
75
5
53
34
8
17
39
1.80
28078--28125
22
2.2
22
84
0
60
27
6
22
43
1.77
28190--28295
22
4.8
22
76
11
92
33
7
19
38
1.80
28161--28300
22
6.4
21
74
13
88
37
7
18
36
1.80
28338--28379
22
2.0
22
90
4
68
38
11
16
33
1.86
28325--28379
22
2.6
21
82
5
67
41
9
16
32
1.80
28393--28520
22
5.9
21
74
6
87
43
8
14
32
1.76
28623--28692
19
3.5
20
80
5
79
42
8
20
28
1.81
28655--29220
22
26.0
22
69
13
205
38
9
16
35
1.82

Tables:   1

The End!