Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010678.1 Corchorus capsularis cultivar CVL-1 contig10699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72812

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6681--6726
16
2.8
17
87
12
78
4
10
28
56
1.53
14806--14856
25
2.0
25
84
7
66
9
21
0
68
1.18
16656--16689
14
2.4
14
85
0
50
38
17
5
38
1.74
20260--20311
22
2.2
24
80
16
65
36
11
1
50
1.50
20483--20514
9
3.4
9
95
4
55
12
0
0
87
0.54
20919--20960
21
2.0
21
95
0
75
19
30
33
16
1.94
20940--21035
33
2.9
33
90
3
131
18
43
29
8
1.79
23970--24010
6
7.2
6
79
20
52
19
31
31
17
1.95
23970--24010
11
3.6
12
78
21
52
19
31
31
17
1.95
28950--29021
37
1.9
38
88
8
112
13
22
12
51
1.75
30567--30604
18
2.1
19
90
5
60
28
13
39
18
1.88
32562--32716
52
3.0
52
88
0
238
29
15
20
35
1.93
36262--36290
7
4.1
7
100
0
58
31
0
27
41
1.56
38834--38879
13
3.3
13
80
14
56
80
10
2
6
0.98
45577--45613
11
3.5
11
82
17
51
86
0
13
0
0.57
46197--46239
19
2.3
18
84
4
59
72
0
20
6
1.08
48500--48786
105
2.7
105
85
5
400
24
25
16
33
1.96
48876--49301
41
10.8
42
71
20
208
23
15
21
38
1.92
48839--49055
35
5.8
35
72
21
140
20
16
22
40
1.91
48992--49299
35
7.9
35
73
16
195
23
15
21
40
1.90
48836--49098
78
3.4
76
86
5
359
22
16
22
39
1.92
49075--49301
75
2.9
75
88
7
305
24
15
21
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49769--49793
13
1.9
13
100
0
50
88
8
0
4
0.64
49954--49991
20
1.9
20
88
0
58
23
36
15
23
1.94
50289--50320
17
1.9
17
93
6
57
81
18
0
0
0.70

Tables:   1

The End!