Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010680.1 Corchorus capsularis cultivar CVL-1 contig10701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27495

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5137--5212
38
2.0
37
89
2
116
61
3
7
26
1.41
5229--5282
27
2.1
24
83
10
63
46
7
7
38
1.60
5250--5326
34
2.3
33
84
8
102
54
9
9
27
1.62
5604--5640
6
6.5
6
96
3
60
56
10
0
32
1.34
15621--15893
151
1.8
150
84
4
370
35
8
3
52
1.50
17425--17471
11
3.8
13
88
8
55
48
0
4
46
1.21
17436--17471
2
19.0
2
88
11
58
50
0
0
50
1.00
17436--17471
9
3.8
10
89
10
58
50
0
0
50
1.00
17720--17807
45
2.0
45
93
0
149
31
19
21
27
1.97
19877--19913
6
6.3
6
96
3
67
35
0
13
51
1.41
19934--19960
14
1.9
14
100
0
54
22
11
7
59
1.56
20398--20459
27
2.3
26
83
10
81
45
8
1
45
1.42
20634--21060
222
1.9
222
87
2
617
28
16
16
38
1.90
21679--21731
26
2.0
27
88
7
81
39
3
1
54
1.29
23730--23768
20
1.9
20
89
5
60
58
7
2
30
1.39
23775--23930
74
2.1
74
91
3
253
39
8
30
21
1.83
25353--25379
2
13.5
2
100
0
54
48
0
0
51
1.00
26505--26534
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!