Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010688.1 Corchorus capsularis cultivar CVL-1 contig10709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78097

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5417--5443
2
13.5
2
100
0
54
0
0
48
51
1.00
12470--12504
3
11.7
3
87
0
52
31
0
37
31
1.58
14850--14875
6
4.3
6
100
0
52
15
34
0
50
1.45
34635--34680
1
46.0
1
91
0
65
4
2
0
93
0.41
38930--38958
14
2.1
14
100
0
58
34
6
6
51
1.55
42652--42702
26
2.0
26
96
0
93
17
19
7
54
1.67
52462--52571
41
2.7
41
98
0
211
31
18
10
39
1.85
55834--55940
31
3.5
31
85
0
133
17
22
27
32
1.96
62370--62405
17
2.1
17
100
0
72
16
11
0
72
1.12
71424--71510
31
2.8
31
85
0
84
18
21
24
35
1.95
71451--71528
31
2.5
31
93
0
129
16
25
26
30
1.97
75006--75042
15
2.5
15
95
4
67
75
5
13
5
1.15
75190--75235
19
2.3
21
89
10
71
58
4
0
36
1.18
75432--78095
324
8.3
323
87
2
3790
35
16
14
33
1.89

Tables:   1

The End!