Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010692.1 Corchorus capsularis cultivar CVL-1 contig10713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23751
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:153 original size:1 final size:1

Alignment explanation


    Indices: 142--186  Score: 81
    Period size: 1  Copynumber: 45.0  Consensus size: 1

        132 TTTAGGTTTG

                *                                        
        142 TTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        187 CTAATTTCAT


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   1   42  1.00

ACGTcount: A:0.02, C:0.00, G:0.00, T:0.98


Consensus pattern (1 bp):   
T

Found at i:8566 original size:116 final size:116

Alignment explanation


    Indices: 8362--8592  Score: 390
    Period size: 116  Copynumber: 2.0  Consensus size: 116

       8352 CGTGCAGAAC

                                        *  *                                 
       8362 AATTTTACATACCATTCTGATGCATTCTTGATTCTACTAAACATAAACACTGATAATTTATAACA
          1 AATTTTACATACCATTCTGATGCATTCTCGACTCTACTAAACATAAACACTGATAATTTATAACA

                            *               *                  
       8427 TTTACTGGCATTTTCTTTAACTTTAAAAGCACGTGAAGGTATGCTGAGGAT
         66 TTTACTGGCATTTTCTCTAACTTTAAAAGCACATGAAGGTATGCTGAGGAT

                                                        * *            *     
       8478 AATTTTACATACCATTCTGATGCATTCTCGACTCTACTAAACATGACCACTGATAATTTGTAACA
          1 AATTTTACATACCATTCTGATGCATTCTCGACTCTACTAAACATAAACACTGATAATTTATAACA

                                                    *         
       8543 TTTACTGGCATTTTCTCTAACTTTAAAAGCACATGAAGGTGTGCTGAGGA
         66 TTTACTGGCATTTTCTCTAACTTTAAAAGCACATGAAGGTATGCTGAGGA

       8593 CAGTTAGCTT


Statistics
Matches: 107,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 116  107  1.00

ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35


Consensus pattern (116 bp):   
AATTTTACATACCATTCTGATGCATTCTCGACTCTACTAAACATAAACACTGATAATTTATAACA
TTTACTGGCATTTTCTCTAACTTTAAAAGCACATGAAGGTATGCTGAGGAT
Done.