Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010699.1 Corchorus capsularis cultivar CVL-1 contig10720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115850

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383--409
2
13.5
2
100
0
54
48
0
0
51
1.00
670--703
3
12.0
3
87
12
54
32
0
0
67
0.91
670--704
14
2.5
13
86
13
52
34
0
0
65
0.93
670--703
17
2.0
17
94
0
59
32
0
0
67
0.91
3638--3668
3
10.0
3
93
6
53
64
0
0
35
0.94
5406--5449
21
2.1
21
87
8
63
20
22
9
47
1.78
5679--5720
21
2.1
19
86
8
57
45
0
0
54
0.99
16416--16478
29
2.2
29
97
2
119
47
0
19
33
1.49
16468--16517
25
2.0
26
88
4
75
52
0
8
40
1.31
16964--16988
12
2.1
12
100
0
50
32
16
8
44
1.76
21394--21424
15
2.1
15
93
0
53
32
32
19
16
1.94
21369--21414
24
2.0
23
91
8
76
26
34
21
17
1.95
30087--30114
2
14.0
2
100
0
56
50
0
0
50
1.00
31031--31059
1
29.0
1
100
0
58
100
0
0
0
0.00
44618--44646
2
14.5
2
100
0
58
51
0
0
48
1.00
45807--46035
78
3.2
69
83
12
268
37
12
0
49
1.44
45872--46041
78
2.2
78
96
0
313
37
13
0
48
1.43
47676--47710
15
2.3
15
85
0
52
5
28
0
65
1.15
56909--56934
8
3.2
8
100
0
52
53
11
11
23
1.69
61208--61234
10
2.7
10
100
0
54
92
7
0
0
0.38
65734--65768
2
17.5
2
93
0
61
48
2
0
48
1.16
86097--86134
14
2.7
14
100
0
76
13
28
21
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86855--86911
28
2.1
27
83
6
71
35
7
21
36
1.80
91628--91663
12
3.0
12
87
0
54
19
33
11
36
1.87
108076--108103
2
14.0
2
100
0
56
50
0
0
50
1.00
108658--108682
3
8.3
3
100
0
50
36
0
32
32
1.58
115598--115641
14
2.9
15
83
13
54
15
29
2
52
1.55
115680--115765
32
2.7
33
92
5
149
10
40
33
15
1.81
115685--115782
32
3.1
32
88
5
137
12
39
34
13
1.82

Tables:   1

The End!