genome.fa.s10700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010700.1 Corchorus capsularis cultivar CVL-1 contig10721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169214

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--70	32	2.2	32	86	0	95	8	40	38	12	1.74
48--155	34	3.3	34	88	3	123	16	34	35	13	1.89
15--155	33	4.3	33	83	3	169	14	35	36	13	1.86
201--285	42	2.0	42	86	4	118	31	20	10	37	1.86
13740--13770	2	15.5	2	93	0	53	45	0	0	54	0.99
18347--18374	1	28.0	1	100	0	56	0	0	0	100	0.00
37807--38244	222	2.0	222	83	4	553	36	10	14	37	1.81
38031--42852	332	14.6	333	80	5	4675	32	14	16	35	1.90
42951--42988	20	1.9	20	94	0	67	23	28	28	18	1.98
43080--43118	20	1.9	21	89	5	62	61	2	5	30	1.31
43580--46993	333	10.3	331	80	5	3306	33	14	16	35	1.89
43580--46991	661	5.1	663	85	4	4092	33	14	16	35	1.89
43580--46991	663	5.1	661	85	4	4056	33	14	16	35	1.89
59880--59917	6	6.5	6	90	3	51	34	23	0	42	1.55
59884--59918	18	2.0	17	94	5	61	34	25	0	40	1.56
62436--62472	7	5.1	7	87	6	56	70	0	2	27	1.01
62435--62483	22	2.2	22	88	0	71	67	2	2	28	1.13
62435--62483	11	4.5	11	80	10	55	67	2	2	28	1.13
89972--90064	11	7.1	14	65	22	58	33	2	8	55	1.42
90003--90070	26	2.6	26	86	9	102	33	1	10	54	1.43
90078--90134	25	2.4	24	88	5	80	49	0	19	31	1.49
92249--92297	23	2.0	25	88	7	75	32	20	6	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115589--115652	29	2.1	31	85	5	87	26	17	4	51	1.64
115961--116015	22	2.5	22	82	5	67	34	16	20	29	1.94
116003--116068	22	2.9	22	77	4	69	28	6	21	43	1.76
116188--116494	22	13.8	22	68	19	113	41	8	14	35	1.77
116281--116516	44	5.3	44	74	10	162	42	8	12	35	1.74
116353--116519	88	1.9	88	83	4	221	43	9	13	34	1.76
116346--116494	66	2.3	66	79	2	156	42	9	13	34	1.76
116602--116648	19	2.4	20	85	7	69	42	12	19	25	1.86
116638--116932	22	13.5	22	72	9	140	40	8	13	37	1.76
116877--116942	22	3.0	22	84	0	69	36	10	15	37	1.82
116983--117038	22	2.5	22	82	2	67	30	12	19	37	1.89
116984--117069	45	1.9	45	80	4	102	32	11	16	39	1.84
119444--119511	31	2.2	31	86	0	91	16	26	25	32	1.96
119485--119535	24	2.1	24	88	0	75	15	27	25	31	1.96
119521--119597	31	2.5	31	86	0	109	15	29	20	33	1.94
119454--119565	55	2.0	55	82	0	134	16	27	22	33	1.96
124826--124851	3	8.7	3	100	0	52	65	0	0	34	0.93
125845--125871	3	9.0	3	100	0	54	0	33	0	66	0.92
137439--137480	2	21.0	2	100	0	84	0	50	0	50	1.00
143509--143751	70	3.2	70	75	19	245	35	13	1	48	1.53
150308--150372	33	2.0	33	90	3	105	40	1	32	26	1.65
159024--159204	100	1.8	100	87	0	272	27	16	26	29	1.96

Tables:   1

The End!