Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010701.1 Corchorus capsularis cultivar CVL-1 contig10722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86720

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14400--14424
2
12.5
2
100
0
50
0
0
48
52
1.00
17239--17280
20
2.1
20
90
0
66
19
38
9
33
1.84
17312--17425
47
2.4
47
100
0
228
34
28
0
36
1.58
17486--17534
11
4.1
11
76
19
53
55
8
0
36
1.30
17476--17543
26
2.6
26
93
4
111
54
8
0
36
1.32
17476--17543
15
5.1
14
70
26
58
54
8
0
36
1.32
26440--26477
11
3.5
11
89
10
51
39
0
2
57
1.12
28620--28653
10
3.3
10
87
4
50
0
17
5
76
0.98
30426--30497
31
2.3
31
80
0
81
29
13
23
33
1.93
31079--31113
2
17.5
2
100
0
70
51
0
0
48
1.00
44551--44577
2
13.5
2
100
0
54
51
0
0
48
1.00
46079--46108
2
15.0
2
100
0
60
50
0
0
50
1.00
46873--46901
3
9.7
3
100
0
58
34
0
0
65
0.93
59507--59613
41
2.6
39
76
12
108
45
2
0
51
1.15
60751--61089
22
15.5
22
74
9
149
30
15
16
38
1.90
60731--61148
44
9.6
44
72
11
220
30
16
15
37
1.90
60757--61005
87
2.8
88
78
3
232
30
16
16
36
1.90
60749--61091
109
3.2
106
74
5
326
29
15
16
38
1.90
60900--61137
131
1.8
130
79
9
279
28
18
16
36
1.92
61072--61202
22
6.0
21
70
11
75
33
19
9
37
1.85
85814--85872
28
2.1
28
90
0
91
27
8
20
44
1.80

Tables:   1

The End!