Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010702.1 Corchorus capsularis cultivar CVL-1 contig10723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4930
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:674 original size:323 final size:319
Alignment explanation
Indices: 1--1299 Score: 1784
Period size: 323 Copynumber: 4.1 Consensus size: 319
*
1 CCGACTTCAGTTTTTGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACC
1 CCGAC-TCAG-TTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACC
* *
66 AAATCTCAGCCA-AGTTGGATTTAACGATTTATTTTTACGTGCATCTGAATCTTGTTTTGATTTA
64 AAATCTCAGCCACA-TTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTA
**
130 ATTAGAAATAAATTCGAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTCAAATTTTT
128 ATTAGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTC-AA-TTTT
* * ** *
195 TTCGGCGTAGAATTATATACATTTTCTGAATATATTTTGTGAAGAATTGAGAAATAATATTTTGG
191 TT-GGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAATTGAGAAATAATATTTTGG
*
260 GTCAGTTTATAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAGGGC
255 GTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAGGGC
*
325 TCCGGCTCAGTTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACCA
1 -CCGACTCAGTTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACCA
* *
390 AATCTCAACCACGTTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
65 AATCTCAGCCACATTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
*
455 TAGAAATAAATTAAAAAAAAATGGAAAAACGATATTAGAAACGGGAAAATCCCGTCAATTTTTTC
130 TAGAAATAAATT-AAAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTCAATTTTTT-
* * *
520 AGAGTTGAATTAAATATTTTTTCTGAATATATTTTGCGAAAAATTGAGAAATAAT-TTTTCGGGT
193 GGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAATTGAGAAATAATATTTT-GGGT
* * *
584 TAGTTTTTAGCCAAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCGGGGC
257 CAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAGGGC
* * *
647 CACGGCTCAGTTTAGCATGATTTTTTTGCAG-AA-A-------AAATATCTATATTCATCGAACA
1 C-CGACTCAGTTTAGCATGA-TTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACC
* * * *
703 AAATCTCAGCCACATTAGATTTCAGGATTTATTTTTACGAGCATCTGAATCTTG-GTCGATTTAA
64 AAATCTCAGCCACATTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAA
* * * *
767 TTAGAAATAAATTCGAAAAAAATGGAAAAACGAAATTAGAAGTGGGAAAATCTCGTCAATTTTTT
129 TTAGAAATAAATT-AAAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTCAATTTTTT
* *
832 GGCGTTGAATTAAACA-TTTTTCTGAATATATTTTGTAAAAAATTGAGAAATAAT-TTTTCGGGT
193 GGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAATTGAGAAATAATATTTT-GGGT
* * * * *
895 CCGTTTTTAGCTGAAATCGTGTATTAACCATCACGGTTCTTGTCTAAAAATGCGTTTCAAGGC
257 CAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAGGGC
* * * * *
958 ATCGACTCTGTTTAGCATGATTTTTTGCAAAAAGACTCCTTGAAATATCTAAATTCATCGAACCA
1 -CCGACTCAGTTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACCA
* *
1023 AATCTCAGCCACATTGGATTTTAGGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
65 AATCTCAGCCACATTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
* * * * * * *
1088 TAGAATTAAATTAGAAAAAATAGAAAAACAATATTAGAAGCCGGAAAAT-CGGTCAATCTTTTGG
130 TAGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTCAATTTTTTGG
* *
1152 CGTTGAATTATATATTTTTTTCTGAATTTATTTTGTGAAAAATTGAGAAATAATATTTTGGGTCA
195 CGTTGAATTAAATA-TTTTTTCTGAATATATTTTGTGAAAAATTGAGAAATAATATTTTGGGTCA
* * * * *
1217 GTTCTTAGACGAAATCGTGTATTAACCATCACGGTTCTAGGCTAAAAATGAGTTTC-GTGGAC
259 GTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAG-GG-C
1279 CCGACTCAGTTTAGCATGATT
1 CCGACTCAGTTTAGCATGATT
1300 GTCACGCCCC
Statistics
Matches: 871, Mismatches: 82, Indels: 47
0.87 0.08 0.05
Matches are distributed among these distances:
310 9 0.01
311 118 0.14
312 14 0.02
313 68 0.08
314 69 0.08
318 24 0.03
319 102 0.12
320 133 0.15
321 11 0.01
322 137 0.16
323 138 0.16
324 44 0.05
325 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (319 bp):
CCGACTCAGTTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTATATTCAACGAACCAA
ATCTCAGCCACATTGGATTTAACGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
AGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCCGTCAATTTTTTGGC
GTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAATTGAGAAATAATATTTTGGGTCAGT
TTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCTAAAAACGCGTTTCAGGGC
Found at i:733 original size:322 final size:312
Alignment explanation
Indices: 44--1299 Score: 1646
Period size: 322 Copynumber: 4.0 Consensus size: 312
34 AGACTCCTTG
* *
44 AAATATCTATATTCAACGAACCAAATCTCAGCCAAGTTGGATTTAACGATTTATTTTTACGTGCA
1 AAATATCTATATTCAACGAACCAAATCTCAGCCACGTTGGATTTAACGATTTATTTTTACGAGCA
* **
109 TCTGAATCTTGTTTTGATTTAATTAGAAATAAATTCGAAAAAATGGAAAAACGATATTAGAAGCG
66 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAAGCG
* * ** *
174 GGAAAATCCCGTCAAATTTTTTTCGGCGTAGAATTATATACATTTTCTGAATATATTTTGTGAAG
131 GGAAAATCCCGTC-AA-TTTTTT-GGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAA
*
239 AATTGAGAAATAATATTTTGGGTCAGTTTATAGCCGAAATCGTGTATTAACCATCACGGTTCTTG
193 AATTGAGAAATAATATTTTGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTG
*
304 GCTAAAAACGCGTTTCAGGGCTCCGGCTCAGTTTAGCATGATTTTTTGCAGAAAGACTCC
258 GCTAAAAACGCGTTTCAGGGC-CCGACTCAGTTTAGCATGATTTTTTGCAG-AAGA---C
*
364 TTGAAATATCTATATTCAACGAACCAAATCTCAACCACGTTGGATTTAACGATTTATTTTTACGA
1 ---AAATATCTATATTCAACGAACCAAATCTCAGCCACGTTGGATTTAACGATTTATTTTTACGA
429 GCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTAAAAAAAAATGGAAAAACGATATTAGA
63 GCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-AAAAAAAATGGAAAAACGATATTAGA
* * * *
494 AACGGGAAAATCCCGTCAATTTTTTCAGAGTTGAATTAAATATTTTTTCTGAATATATTTTGCGA
127 AGCGGGAAAATCCCGTCAATTTTTT-GGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGA
* *
559 AAAATTGAGAAATAAT-TTTTCGGGTTAGTTTTTAGCCAAAATCGTGTATTAACCATCACGGTTC
191 AAAATTGAGAAATAATATTTT-GGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTC
* *
623 TTGGCTAAAAACGCGTTTCGGGGCCACGGCTCAGTTTAGCATGATTTTTTTGCAGAA-A-
255 TTGGCTAAAAACGCGTTTCAGGGCC-CGACTCAGTTTAGCATGA-TTTTTTGCAGAAGAC
* * * * * *
681 AAATATCTATATTCATCGAACAAAATCTCAGCCACATTAGATTTCAGGATTTATTTTTACGAGCA
1 AAATATCTATATTCAACGAACCAAATCTCAGCCACGTTGGATTTAACGATTTATTTTTACGAGCA
* * * *
746 TCTGAATCTTG-GTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAAACGAAATTAGAAGT
66 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-AAAAAAAATGGAAAAACGATATTAGAAGC
* * *
810 GGGAAAATCTCGTCAATTTTTTGGCGTTGAATTAAACA-TTTTTCTGAATATATTTTGTAAAAAA
130 GGGAAAATCCCGTCAATTTTTTGGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAA
* * *
874 TTGAGAAATAAT-TTTTCGGGTCCGTTTTTAGCTGAAATCGTGTATTAACCATCACGGTTCTTGT
195 TTGAGAAATAATATTTT-GGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGG
* * * * *
938 CTAAAAATGCGTTTCAAGGCATCGACTCTGTTTAGCATGATTTTTTGCAAAAAGACTCC
259 CTAAAAACGCGTTTCAGGGC-CCGACTCAGTTTAGCATGATTTTTTGC-AGAAGA---C
* * * * *
997 TTGAAATATCTAAATTCATCGAACCAAATCTCAGCCACATTGGATTTTAGGATTTATTTTTACGA
1 ---AAATATCTATATTCAACGAACCAAATCTCAGCCACGTTGGATTTAACGATTTATTTTTACGA
* * * *
1062 GCATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTAGAAAAAATAGAAAAACAATATTAGAA
63 GCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAA
* * * * *
1127 GCCGGAAAAT-CGGTCAATCTTTTGGCGTTGAATTATATATTTTTTTCTGAATTTATTTTGTGAA
128 GCGGGAAAATCCCGTCAATTTTTTGGCGTTGAATTAAATA-TTTTTTCTGAATATATTTTGTGAA
* * *
1191 AAATTGAGAAATAATATTTTGGGTCAGTTCTTAGACGAAATCGTGTATTAACCATCACGGTTCTA
192 AAATTGAGAAATAATATTTTGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTT
* *
1256 GGCTAAAAATGAGTTTC-GTGGACCCGACTCAGTTTAGCATGATT
257 GGCTAAAAACGCGTTTCAG-GG-CCCGACTCAGTTTAGCATGATT
1300 GTCACGCCCC
Statistics
Matches: 833, Mismatches: 80, Indels: 43
0.87 0.08 0.04
Matches are distributed among these distances:
310 8 0.01
311 119 0.14
312 14 0.02
313 68 0.08
314 69 0.08
318 24 0.03
319 102 0.12
320 133 0.16
321 11 0.01
322 137 0.16
323 108 0.13
324 40 0.05
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (312 bp):
AAATATCTATATTCAACGAACCAAATCTCAGCCACGTTGGATTTAACGATTTATTTTTACGAGCA
TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTAAAAAAAATGGAAAAACGATATTAGAAGCG
GGAAAATCCCGTCAATTTTTTGGCGTTGAATTAAATATTTTTTCTGAATATATTTTGTGAAAAAT
TGAGAAATAATATTTTGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGGCT
AAAAACGCGTTTCAGGGCCCGACTCAGTTTAGCATGATTTTTTGCAGAAGAC
Found at i:2321 original size:12 final size:13
Alignment explanation
Indices: 2304--2344 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
2294 TCATGCACCC
2304 AAAACATTTATA-
1 AAAACATTTATAT
2316 AAAACATTT-TAT
1 AAAACATTTATAT
*
2328 AAATCATTTATAT
1 AAAACATTTATAT
2341 AAAA
1 AAAA
2345 ACGGTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 2 0.08
12 17 0.68
13 6 0.24
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAACATTTATAT
Found at i:2531 original size:13 final size:13
Alignment explanation
Indices: 2513--2537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2503 AAATATTAAT
2513 ATCAAAATCATAG
1 ATCAAAATCATAG
2526 ATCAAAATCATA
1 ATCAAAATCATA
2538 AACCAGAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (13 bp):
ATCAAAATCATAG
Found at i:3068 original size:16 final size:15
Alignment explanation
Indices: 3047--3079 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
3037 AAATTTCAAT
3047 TTATTTCCTATTTTCC
1 TTATTTCCT-TTTTCC
3063 TTATTTCCTTTTTCC
1 TTATTTCCTTTTTCC
3078 TT
1 TT
3080 TTCTGTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTCCTTTTTCC
Found at i:3819 original size:321 final size:320
Alignment explanation
Indices: 3211--4914 Score: 2144
Period size: 321 Copynumber: 5.3 Consensus size: 320
3201 ATCTTGGTCG
* * *
3211 ATTCATCGAACAAAATCTCAGCCACATTAGATTTCAGGATTTATTTTTACGAGCATCTGAATCTT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
* *
3276 CG-TT-GATTTAATTAGAATTAAATTCGAAAAAAAAAATGGAAAAACGAAATTAGTAGCGGGAAA
66 -GTTTCGATTTAATTAGAATTAAATTCG----AAAAAATGGAAAAACGATATTAGAAGCGGGAAA
* * * * * *
3339 ATCTCGTCAATTTTTTTGGCGTGGAATTAAACATTTTTCTGAATATATTTTGTGAAAAATTGAGA
126 ATCCCATCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAATATATTTTGCGAAAAATTGAGA
* * * * *
3404 AATAATTTTTCGTGTTC-GGTTTTAGCTGAAATCGTGTATTAACTATCACGGTTCTTGGCTAAAA
191 AATAATTTTTCG-GGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGACTAAAA
* ** * ** * *
3468 CCGCGTTTCAAGG-CATCGACTCTGTTTAGCATGATTTTTTGCAGAAAGACTCTTTGAACTATCT
255 ACGCGTTTCGGGGAC-CCGACTCAATTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCT
3532 AA
319 AA
* * *
3534 ATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTAAGAGCAACTGAATCTT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
* * * **
3599 GTTTCGGTTTAATTAGAATTAAATTCGGAAAAATGGAAAAACGATATTAGATGCTTGAAAATCCC
66 GTTTCGATTTAATTAGAATTAAATTCGAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCC
* * * *
3664 ATCAATATTTTCGGCATTGAAATATATATTTTTTCTGAATATATTTTGCGAAAAATTGAGAAATA
131 ATCAATTTTTTTGGCGTTGAATTATATA-TTTTTCTGAATATATTTTGCGAAAAATTGAGAAATA
* * *
3729 ATAATTT-GGGTCAGTTTTTAGCCGAAATCGTGTATTAACTATCACGGTTCTTGACTAAAAACAC
195 AT-TTTTCGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGACTAAAAACGC
* * * * * * *
3793 GATTT-GGGGCCCCGACGCTATTTAGCATTATTTTTTGCAGGAAGACTCCATGAACTATCTAA
259 G-TTTCGGGGACCCGACTCAATTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTAA
* * * * *
3855 ATTCATCGAACCAAATCTCAGCCATATTGGATTTAAGGATTTACTTTTGCGTGCATCTAAATTCT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAA-TCT
* * * *
3920 TGTTTCGATTTAATTTGAATTAAATTCG-GAAAATGGAAAAACAATATTAGAAGCGTGAAAATCC
65 TGTTTCGATTTAATTAGAATTAAATTCGAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCC
* * * * * *
3984 CATCAATATTTTCGACATTGAAATATAAATTTTTTCTGAATATATTTTGCGAAAAATTGAGAAAT
130 CATCAATTTTTTTGGCGTTGAATTATATA-TTTTTCTGAATATATTTTGCGAAAAATTGAGAAAT
* * * * *
4049 AATATTTTAGGAT-AGTTTTTAGCCGAAATCGTGTA-T--GCATCACAGTTCTTGGCTAAAAACG
194 AAT-TTTTCGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGACTAAAAACG
* * *
4110 CGTTTC-GGG-CCCGATTCAGTTTAGTATGATTTTTTGCAGAAAGACTCCTTGAAATATCTAA
258 CGTTTCGGGGACCCGACTCAATTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTAA
* *
4171 ATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGAATTATTTTTACGAGCATCTGAATCTT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
* *
4236 GTTTCGATTTAATTAGAATTAAATTAGAAAAAAATGGAAAAACAATATTAGAAGCGGGAAAATCC
66 GTTTCGATTTAATTAGAATTAAATTCG-AAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCC
4301 CATCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAATATATTTTGCGAAAAATTGAGAAATA
130 CATCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAATATATTTTGCGAAAAATTGAGAAATA
* * * *
4366 ATTTTTCGGGTTAGTTTTTAGCCGAAATCGTGTATTATCCATCACGGTTCTT-AGTTAAAAACGT
195 ATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGA-CTAAAAACGC
* *
4430 GTTTCGGGGACCCGACTCAATTTAGCATGATTTTTTTGCAGAAATACTCCTTGAAATATCTAT
259 GTTTCGGGGACCCGACTCAATTTAGCATGA-TTTTTTGCAGAAAGACTCCTTGAAATATCTAA
* * * * * *
4493 ATTCAGCGAACCAAATCACAGTCACGTTGGATTTAAGGATTTATGTTTACGAGCATTTGAATCTT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
* * *
4558 GTTTCGATTTAATTAGAAATAAATTCGAAAAAATTTGGAAAAACGAAATTAGAAACGGGAAAAT-
66 GTTTCGATTTAATTAGAATTAAATTCGAAAAAA--TGGAAAAACGATATTAGAAGCGGGAAAATC
** * * *
4622 CTGTCAATTTTTTTGGCGTTGAATTAAATATTTTTCTAAATATATTTTGCGAAAAATTAAGAAAT
129 CCATCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAATATATTTTGCGAAAAATTGAGAAAT
* * *
4687 AATTTTTCGGGTAAGTTTTTAGCCAAAATCGTGTATTATCCATCACGGTTCTT-AGCTAAAAACG
194 AATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGA-CTAAAAACG
* *
4751 TGTTTCGGGGACCCGACTCAATTTAGCATGAATTTTTTTTGCAGAAAGACTCCTTAAAATATCTA
258 CGTTTCGGGGACCCGACTCAATTTAGCATG-A--TTTTTTGCAGAAAGACTCCTTGAAATATCTA
*
4816 T
320 A
* * *
4817 ATTCAGCGAACCAAATCTCAGCCACGTTAGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
1 ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
* * * *
4882 ATTTCGATTTAATTAGAAATATATTCAAAAAAA
66 GTTTCGATTTAATTAGAATTAAATTCGAAAAAA
4915 ATTTGAAAAA
Statistics
Matches: 1226, Mismatches: 131, Indels: 47
0.87 0.09 0.03
Matches are distributed among these distances:
315 36 0.03
316 157 0.13
317 64 0.05
318 22 0.02
319 25 0.02
320 58 0.05
321 331 0.27
322 303 0.25
323 88 0.07
324 142 0.12
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (320 bp):
ATTCATCGAACCAAATCTCAGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCTT
GTTTCGATTTAATTAGAATTAAATTCGAAAAAATGGAAAAACGATATTAGAAGCGGGAAAATCCC
ATCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAATATATTTTGCGAAAAATTGAGAAATAA
TTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTATTAACCATCACGGTTCTTGACTAAAAACGCGT
TTCGGGGACCCGACTCAATTTAGCATGATTTTTTGCAGAAAGACTCCTTGAAATATCTAA
Done.