Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010704.1 Corchorus capsularis cultivar CVL-1 contig10725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122516

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
687--725
11
3.5
11
82
3
51
79
15
5
0
0.90
8017--8090
37
2.0
37
100
0
148
29
27
16
27
1.97
8807--8870
32
2.0
32
96
0
119
48
9
23
18
1.77
10282--10411
33
3.9
33
91
0
206
32
21
18
27
1.97
10416--10476
29
2.1
29
93
0
104
27
21
18
32
1.96
15852--15988
64
2.1
64
90
2
213
50
16
17
15
1.79
18350--18460
38
3.0
38
86
7
174
33
13
24
28
1.93
18724--18878
83
1.9
82
93
1
265
24
15
19
40
1.90
22794--22834
2
20.5
2
90
9
66
46
0
2
51
1.14
30883--30918
15
2.5
14
86
8
54
47
0
13
38
1.44
44277--44429
73
2.1
70
79
12
173
49
0
11
38
1.44
44294--44455
73
2.3
70
81
10
195
52
1
11
35
1.45
44413--44488
39
1.9
39
89
5
118
53
1
11
32
1.45
44338--44559
109
2.0
111
96
2
412
53
1
9
36
1.42
44646--44679
2
16.5
2
87
6
50
50
0
5
44
1.26
47596--47652
2
28.5
2
100
0
114
50
49
0
0
1.00
51741--51771
2
15.5
2
100
0
62
48
0
0
51
1.00
63351--63398
23
2.1
23
100
0
96
25
12
12
50
1.75
63509--63555
22
2.1
22
84
0
58
17
36
19
27
1.93
63958--63982
10
2.5
10
100
0
50
84
0
8
8
0.79
65312--65540
49
4.6
49
90
2
325
21
28
17
32
1.96
92358--92390
3
11.0
3
100
0
66
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94937--94981
2
22.5
2
86
0
63
44
0
6
48
1.29
95318--95363
22
2.1
22
100
0
92
28
36
8
26
1.86
100157--100188
6
5.3
6
92
0
55
0
37
28
34
1.57
104602--104630
3
9.7
3
100
0
58
0
68
31
0
0.89
107090--107212
63
2.0
63
98
0
237
38
17
21
22
1.93
111932--111961
6
5.0
6
100
0
60
33
16
0
50
1.46
117350--117404
3
17.7
3
88
7
83
65
1
0
32
1.03
117488--117557
36
1.9
37
94
2
124
42
8
30
18
1.80
118805--118845
21
2.0
21
90
0
64
39
12
26
21
1.89
119768--120056
144
2.0
144
100
0
578
27
13
24
34
1.93

Tables:   1

The End!