Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010706.1 Corchorus capsularis cultivar CVL-1 contig10727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41723

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1383--1411
2
14.5
2
100
0
58
48
0
0
51
1.00
2118--2158
20
2.0
20
85
0
55
19
9
24
46
1.80
5043--5112
2
38.0
2
79
16
80
45
1
1
51
1.18
7035--7198
84
2.0
84
95
0
292
23
26
16
33
1.96
12248--12342
48
2.0
48
91
0
154
37
15
11
34
1.84
16415--16461
24
2.0
24
91
0
76
31
21
12
34
1.91
19893--19919
5
5.4
5
100
0
54
40
18
0
40
1.51
20995--21038
23
1.9
23
100
0
88
11
4
9
75
1.19
23176--23201
3
8.7
3
100
0
52
0
34
0
65
0.93
27313--27386
16
4.9
16
72
20
61
50
4
0
45
1.20
27362--27397
18
2.1
17
89
5
54
55
0
0
44
0.99
27782--27871
46
2.0
46
95
0
162
21
7
21
50
1.73
27782--27859
23
3.4
23
66
24
56
19
7
20
52
1.70
29402--29432
15
2.1
15
93
0
53
54
9
12
22
1.67
32733--32808
3
25.0
3
97
2
143
0
34
0
65
0.93
41476--41506
3
10.0
3
93
6
53
32
0
0
67
0.91

Tables:   1

The End!