Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010707.1 Corchorus capsularis cultivar CVL-1 contig10728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33102

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
336--515
21
8.6
21
85
2
227
38
23
10
27
1.87
543--638
21
4.5
21
82
7
113
41
22
10
25
1.85
543--637
44
2.2
41
83
5
109
42
22
10
25
1.85
4185--4209
2
12.5
2
100
0
50
52
0
0
48
1.00
5136--5334
103
1.9
103
91
2
328
30
11
18
40
1.86
6281--6305
13
1.9
13
100
0
50
40
16
0
44
1.47
7717--8133
30
13.7
30
86
1
483
33
17
18
31
1.94
7746--8133
181
2.1
183
88
2
575
33
17
18
31
1.93
13121--13205
24
3.6
23
75
3
71
28
18
20
32
1.96
13473--13497
13
1.9
13
100
0
50
8
24
8
60
1.52
18383--18426
15
3.1
15
70
29
51
63
4
6
25
1.38
19415--19664
122
2.0
122
96
0
455
30
14
22
33
1.93
22502--22534
16
2.1
16
88
11
50
72
0
24
3
0.98
23255--23303
17
2.9
17
72
24
50
16
10
14
59
1.61
25659--25701
21
2.0
21
90
0
68
18
39
6
34
1.78
26916--27014
45
2.3
41
83
11
110
42
11
38
8
1.70
30493--30595
51
2.0
51
98
0
197
44
21
8
25
1.80
30981--31008
5
5.6
5
100
0
56
21
17
21
39
1.93
32808--32852
21
2.0
23
83
8
58
20
31
8
40
1.83

Tables:   1

The End!