Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010710.1 Corchorus capsularis cultivar CVL-1 contig10731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63711

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90--162
21
3.5
21
84
3
103
38
28
6
26
1.82
1242--1268
1
27.0
1
100
0
54
0
0
0
100
0.00
1428--1472
3
15.3
3
95
4
83
64
0
0
35
0.94
10843--10895
23
2.3
23
80
0
61
50
1
3
43
1.30
10927--10974
18
2.7
18
81
12
55
52
2
2
43
1.24
11890--11974
23
3.7
23
72
12
68
38
18
5
36
1.75
11891--12560
22
31.0
22
68
15
210
35
16
8
39
1.79
12648--12846
22
9.0
22
74
10
104
37
19
9
34
1.84
12648--12846
66
3.0
64
81
8
220
37
19
9
34
1.84
12634--12842
44
4.8
44
78
3
172
36
17
9
36
1.83
13009--13047
20
2.0
20
85
10
53
64
2
5
28
1.28
13303--13335
15
2.4
14
90
10
50
48
0
0
51
1.00
13501--13645
69
2.1
71
88
2
213
33
19
15
31
1.93
14714--14749
2
18.0
2
100
0
72
50
0
0
50
1.00
15553--15919
156
2.4
155
80
11
405
29
14
21
34
1.93
16260--16307
17
2.8
17
83
0
69
20
29
16
33
1.95
17036--17068
2
16.5
2
100
0
66
48
0
0
51
1.00
17132--17176
22
2.0
22
91
4
72
37
13
4
44
1.64
18200--18303
43
2.4
43
91
3
163
57
22
0
19
1.46
21176--21333
78
2.0
78
100
0
316
28
27
17
26
1.98
33406--33459
27
2.0
27
100
0
108
11
29
44
14
1.80
50376--50409
2
17.5
2
87
6
52
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50379--50408
15
2.0
15
93
0
51
43
0
0
56
0.99
55772--55796
12
2.1
12
100
0
50
56
8
0
36
1.29
55846--55881
15
2.4
14
86
13
54
0
0
13
86
0.58
57289--57559
138
2.0
136
96
1
497
23
13
15
46
1.82
58230--58256
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!