Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010711.1 Corchorus capsularis cultivar CVL-1 contig10732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48476

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--127
33
3.5
33
77
6
137
13
33
38
13
1.85
3524--3669
75
1.9
75
87
0
211
41
13
8
37
1.74
4547--4580
2
17.5
2
87
6
52
47
0
0
52
1.00
12977--13018
18
2.4
17
84
7
57
47
2
4
45
1.36
13095--13125
2
15.5
2
100
0
62
51
0
0
48
1.00
19314--19418
33
3.2
33
93
0
183
39
18
10
32
1.84
19314--19439
66
1.9
66
86
3
182
40
19
9
30
1.84
25363--25407
21
2.1
21
83
0
54
31
31
22
15
1.95
26611--26636
12
2.2
12
100
0
52
30
15
15
38
1.88
26900--26959
21
2.9
20
78
7
66
8
8
3
80
1.02
40056--40132
32
2.4
32
91
0
127
12
11
38
36
1.80
40075--40125
15
3.3
15
72
20
50
17
11
37
33
1.86
40056--40142
32
2.7
31
82
3
102
11
11
39
37
1.78
40288--40328
16
2.6
16
88
0
55
2
14
34
48
1.57
40301--40334
16
2.1
16
94
0
59
2
11
32
52
1.53
47371--47431
22
2.7
22
80
10
70
77
4
9
8
1.13
47399--47430
16
1.9
17
93
6
57
75
3
15
6
1.14
47368--47440
22
3.3
21
73
19
60
73
4
12
9
1.21
48086--48151
30
2.2
30
86
5
89
22
37
30
9
1.85

Tables:   1

The End!