genome.fa.s10714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010714.1 Corchorus capsularis cultivar CVL-1 contig10735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84509

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822--1126	102	3.0	102	85	6	386	36	18	12	33	1.88
8251--8294	1	44.0	1	100	0	88	0	0	0	100	0.00
11525--11583	31	2.0	30	84	12	79	52	28	11	6	1.63
11804--11852	2	25.0	2	87	4	73	44	4	0	51	1.20
17433--17470	19	2.0	19	100	0	76	26	10	5	57	1.53
18268--18326	25	2.5	24	88	5	84	35	22	0	42	1.54
18336--18403	26	2.6	26	90	0	109	54	10	1	33	1.43
18514--18602	32	2.7	33	91	3	135	13	38	30	17	1.89
18801--18845	21	2.1	21	87	0	63	40	8	37	13	1.76
19971--20021	26	2.0	25	85	11	68	54	1	5	37	1.36
20726--20767	2	20.5	2	95	4	75	47	0	2	50	1.14
21699--21905	22	9.4	22	69	9	82	35	13	8	42	1.74
24206--24266	27	2.3	26	83	16	72	44	1	8	45	1.43
37490--37565	35	2.2	35	78	4	82	67	17	3	11	1.37
37491--37558	35	2.0	35	82	2	84	67	17	4	10	1.36
53505--53539	1	35.0	1	100	0	70	0	0	0	100	0.00
61693--61729	12	3.1	12	96	0	65	27	35	37	0	1.57
68137--68327	101	1.9	100	80	7	226	43	13	14	28	1.84
68325--68456	42	3.1	41	77	4	138	39	19	15	25	1.91
68560--68639	42	1.9	42	84	0	106	38	16	15	30	1.89
76554--76636	42	2.0	43	82	2	105	36	13	15	34	1.87
77431--77571	42	3.4	42	88	2	176	42	17	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77543--77615	34	2.1	34	82	0	83	45	24	10	19	1.82
77779--77958	72	2.5	72	85	1	238	45	20	7	26	1.78
77808--77937	38	3.6	38	75	13	128	43	20	7	28	1.79
78181--78271	42	2.1	43	83	2	112	47	14	9	28	1.76
78324--78426	42	2.5	42	83	0	125	42	16	14	26	1.86
78556--78764	114	1.8	116	85	2	296	43	20	12	23	1.86
78680--78852	72	2.4	72	81	2	188	43	21	10	23	1.84
78709--78830	38	3.3	37	75	9	124	44	21	9	24	1.82
78709--78867	38	4.4	37	73	9	123	44	22	10	23	1.84
79601--79664	34	1.9	34	83	3	85	51	20	7	20	1.71
83212--83297	37	2.4	37	90	7	133	43	20	8	27	1.80
84441--84509	2	34.5	2	100	0	138	49	0	50	0	1.00

Tables:   1

The End!