Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001072.1 Corchorus capsularis cultivar CVL-1 contig01072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2215
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40


Found at i:1168 original size:116 final size:118

Alignment explanation


    Indices: 939--1171  Score: 407
    Period size: 116  Copynumber: 2.0  Consensus size: 118

        929 ACACAAAAAA

                                                                             
        939 TGCATTTTTTAGTCAATTTGGCTACTTATCCTTACAACTCTTAGTAACTTTTTCTTGTATAATAA
          1 TGCATTTTTTAGTCAATTTGGCTACTTATCCTTACAACTCTTAGTAACTTTTTCTTGTATAATAA

                                                  **             
       1004 ATATTATCAATCTTGTAATCTTAAATTACTACTCCCTCTGTTCCTTATTATTT
         66 ATATTATCAATCTTGTAATCTTAAATTACTACTCCCTCCATTCCTTATTATTT

                                               *                         *   
       1057 TGCATTTTTTAGTCAATTTGGCTACTTATCCTTACGACTCTTAGTAA-TTTTT-TTGTATACTAA
          1 TGCATTTTTTAGTCAATTTGGCTACTTATCCTTACAACTCTTAGTAACTTTTTCTTGTATAATAA

                                                       *        
       1120 ATATTATCAATCTTGTAATCTTAAATTACTACTCCCTCCATTCGTTATTATT
         66 ATATTATCAATCTTGTAATCTTAAATTACTACTCCCTCCATTCCTTATTATT

       1172 ATAAATCATA


Statistics
Matches: 110,  Mismatches: 5, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
 116   59  0.54
 117    5  0.05
 118   46  0.42

ACGTcount: A:0.26, C:0.18, G:0.07, T:0.48


Consensus pattern (118 bp):   
TGCATTTTTTAGTCAATTTGGCTACTTATCCTTACAACTCTTAGTAACTTTTTCTTGTATAATAA
ATATTATCAATCTTGTAATCTTAAATTACTACTCCCTCCATTCCTTATTATTT
Done.