Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010721.1 Corchorus capsularis cultivar CVL-1 contig10742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27666

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
736--838
40
2.5
42
82
6
131
53
5
18
22
1.66
880--943
32
2.0
33
87
3
94
50
4
17
28
1.66
930--983
26
2.1
26
89
6
83
51
3
16
27
1.61
1073--1208
56
2.4
56
85
2
166
55
4
18
22
1.60
1148--1253
22
5.0
22
79
7
121
54
5
17
21
1.63
1148--1300
44
3.7
42
77
19
162
52
5
19
22
1.65
1233--1267
14
2.4
15
85
9
54
51
5
17
25
1.67
1219--1289
36
2.0
36
94
5
126
50
5
19
23
1.69
1251--1297
22
2.1
22
96
0
85
55
4
19
21
1.60
1367--1430
27
2.2
29
81
13
87
62
0
21
15
1.32
9744--9775
6
5.5
6
96
3
57
56
12
0
31
1.37
9772--9806
13
2.7
13
95
0
61
60
8
11
20
1.57
10718--10742
10
2.5
10
100
0
50
24
8
20
48
1.76
17683--17725
22
1.9
23
85
4
61
34
27
23
13
1.93
22005--22043
19
2.1
19
100
0
78
43
20
0
35
1.52
25275--25317
13
3.2
13
78
18
52
30
34
4
30
1.78
25274--25326
27
2.0
27
92
0
88
32
33
7
26
1.84
27620--27645
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!