Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010728.1 Corchorus capsularis cultivar CVL-1 contig10749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10016

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--162
35
3.7
34
91
4
186
31
19
17
32
1.94
180--248
35
2.0
35
94
0
120
31
17
17
33
1.93
96--284
89
2.1
89
96
0
342
29
15
20
34
1.93
220--596
54
7.0
55
78
5
392
23
17
27
32
1.97
219--602
107
3.6
107
82
5
443
23
17
26
32
1.97
2361--2403
23
1.9
22
90
4
68
25
9
0
65
1.22
2361--2448
17
5.2
17
77
12
74
28
9
2
60
1.39
2361--2429
27
2.7
25
80
12
79
27
8
1
62
1.33
2500--2556
24
2.4
23
77
8
60
29
5
5
59
1.41
6736--6783
21
2.3
21
85
0
60
39
14
35
10
1.80
6750--6790
21
2.0
21
85
0
55
43
12
34
9
1.75

Tables:   1

The End!