Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001073.1 Corchorus capsularis cultivar CVL-1 contig01073, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38


Found at i:479 original size:28 final size:28

Alignment explanation


    Indices: 417--489  Score: 98
    Period size: 28  Copynumber: 2.6  Consensus size: 28

        407 GGTCACATAA

                                        
        417 GGGCATTTTGGTCA-TTTTCATGTTCAG
          1 GGGCATTTTGGTCATTTTTCATGTTCAG

                                          
        444 GGGCATTTTGGTCATTTTTGCAT-TT-AGG
          1 GGGCATTTTGGTCATTTTT-CATGTTCA-G

               *              
        472 GGGTATTTTGGTCATTTT
          1 GGGCATTTTGGTCATTTT

        490 AAGTTCACTT


Statistics
Matches: 42,  Mismatches: 1, Indels: 5
        0.88            0.02        0.10

Matches are distributed among these distances:
  27   15  0.36
  28   24  0.57
  29    3  0.07

ACGTcount: A:0.14, C:0.11, G:0.27, T:0.48


Consensus pattern (28 bp):   
GGGCATTTTGGTCATTTTTCATGTTCAG
Done.