Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010733.1 Corchorus capsularis cultivar CVL-1 contig10754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25041

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--589
22
26.0
21
67
14
143
35
16
9
38
1.81
489--527
20
2.0
20
94
0
69
25
23
7
43
1.80
651--771
44
2.8
44
81
6
122
35
14
9
41
1.77
600--752
66
2.3
66
82
4
175
35
15
9
39
1.80
668--774
22
4.9
23
80
7
125
36
13
8
42
1.74
856--990
22
6.2
20
71
13
72
34
20
7
37
1.80
1031--1210
22
8.1
22
76
7
139
38
18
9
33
1.83
1037--1210
44
3.9
44
78
11
158
38
17
9
34
1.82
2470--2525
7
8.1
7
76
11
53
46
0
5
48
1.25
2465--2525
20
3.0
20
83
9
72
44
0
4
50
1.23
4760--4797
19
2.0
19
100
0
76
31
5
26
36
1.79
4864--4960
38
2.6
37
77
9
106
53
12
19
14
1.72
5057--5152
31
3.1
30
86
3
129
47
4
16
31
1.65
5489--6498
438
2.3
438
85
2
1274
43
13
13
30
1.82
6987--7055
31
2.2
32
84
7
88
26
18
18
36
1.94
19531--19631
31
3.3
30
84
5
132
35
26
24
12
1.92
23804--23841
2
19.5
2
89
5
60
52
0
2
44
1.14

Tables:   1

The End!