genome.fa.s10738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010738.1 Corchorus capsularis cultivar CVL-1 contig10759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77158

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301--342	21	2.0	21	90	0	66	26	30	30	11	1.92
322--429	33	3.3	32	84	5	135	20	41	28	9	1.83
3372--3400	13	2.1	14	93	6	51	20	27	10	41	1.85
6035--6075	21	2.0	21	90	0	64	26	17	14	41	1.88
6450--6524	22	3.5	22	75	1	71	42	12	6	38	1.68
8609--8639	15	2.1	14	94	5	53	67	3	0	29	1.06
9518--9582	31	2.1	31	94	0	112	43	21	15	20	1.88
9856--9973	42	2.9	41	87	7	184	34	10	9	45	1.70
14644--14682	19	2.1	19	85	9	53	56	5	0	38	1.22
14648--14704	26	2.2	26	78	6	62	50	5	1	42	1.35
15378--17339	537	3.6	532	79	11	2174	29	12	9	49	1.72
21112--21154	14	2.9	15	89	6	61	58	0	0	41	0.98
21119--21155	15	2.5	15	90	0	56	67	0	0	32	0.91
21559--21628	31	2.3	30	83	9	88	25	20	28	25	1.99
26172--26217	22	2.1	22	95	0	83	28	30	8	32	1.87
28016--28063	22	2.3	20	86	10	62	39	25	16	18	1.91
27983--28085	53	1.9	52	88	7	154	37	26	18	17	1.93
28035--28132	31	3.2	31	86	4	128	34	27	19	18	1.95
31203--31235	14	2.3	15	89	5	50	42	24	9	24	1.83
32499--32833	178	1.9	178	99	0	661	32	18	5	44	1.71
32911--33000	33	2.7	32	80	13	94	12	38	34	14	1.83
33105--33188	32	2.6	32	94	0	141	13	28	42	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33607--33653	24	2.0	24	100	0	94	38	17	17	27	1.91
33631--33897	55	4.6	55	87	10	381	30	16	22	31	1.95
33759--33886	66	1.9	66	98	0	247	29	16	21	32	1.95
35773--35845	32	2.2	32	92	2	119	35	9	17	36	1.83
35783--35848	32	2.1	32	100	0	132	37	9	19	33	1.84
36318--36344	5	5.4	5	100	0	54	81	0	0	18	0.69
45983--46031	16	3.0	16	78	3	53	55	34	6	4	1.44
45996--46043	15	3.1	15	79	5	60	50	33	10	6	1.62
46244--46378	32	4.2	32	90	0	198	37	37	10	15	1.82
46244--46398	16	9.6	17	72	12	103	37	36	10	14	1.82
47518--47678	80	2.0	81	91	1	261	31	21	14	32	1.93
50347--50444	47	2.1	47	92	0	160	61	9	15	14	1.57
50371--50445	23	3.2	23	64	23	57	60	9	16	14	1.59
57279--57304	12	2.2	12	100	0	52	30	26	15	26	1.96
63383--63429	17	2.8	16	83	3	58	42	14	0	42	1.46
65091--65134	22	2.0	22	86	0	61	38	13	29	18	1.89
69055--69085	2	15.5	2	100	0	62	48	0	0	51	1.00
69477--69784	158	1.9	162	83	9	396	37	14	16	30	1.89
70049--70093	15	2.8	15	83	10	54	48	2	0	48	1.13
71173--71208	19	1.9	18	88	5	54	41	2	22	33	1.68
72778--72818	20	2.0	20	100	0	82	41	19	24	14	1.89

Tables:   1

The End!