Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001074.1 Corchorus capsularis cultivar CVL-1 contig01074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1723
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:869 original size:19 final size:18

Alignment explanation


    Indices: 845--881  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

        835 TTGAAGATTT

                               
        845 CTTGAAGATAATTTGAAGA
          1 CTTGAAGATAA-TTGAAGA

                     *        
        864 CTTGAAGATCATTGAAGA
          1 CTTGAAGATAATTGAAGA

        882 ATTATTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30


Consensus pattern (18 bp):   
CTTGAAGATAATTGAAGA

Found at i:1016 original size:10 final size:10

Alignment explanation


    Indices: 1001--1025  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        991 ATTATTTAGC

                      
       1001 CCATATAAGT
          1 CCATATAAGT

                      
       1011 CCATATAAGT
          1 CCATATAAGT

                 
       1021 CCATA
          1 CCATA

       1026 ATTGGAGTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28


Consensus pattern (10 bp):   
CCATATAAGT
Done.