Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010747.1 Corchorus capsularis cultivar CVL-1 contig10768, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32890

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
303--351
20
2.4
20
86
10
64
44
4
0
51
1.20
5804--5844
20
2.0
20
100
0
82
43
4
4
46
1.46
6222--6249
6
4.7
6
100
0
56
53
17
28
0
1.44
7364--7620
130
2.0
130
96
0
478
45
11
14
28
1.80
9204--9231
1
28.0
1
100
0
56
0
0
0
100
0.00
15122--15151
15
2.0
15
93
0
51
13
50
26
10
1.73
14960--15183
115
1.9
115
94
0
394
22
35
24
17
1.95
15192--15366
26
6.7
26
74
11
151
30
37
13
18
1.89
15249--15341
27
3.5
27
78
8
118
31
37
12
18
1.88
15192--15366
53
3.3
53
91
2
264
30
37
13
18
1.89
16631--16673
21
2.0
21
90
0
68
23
32
11
32
1.90
17914--17989
36
2.1
36
95
0
134
15
26
7
50
1.72
18071--18114
3
14.7
3
100
0
88
31
0
0
68
0.90
20883--20916
11
3.2
10
84
15
50
50
17
2
29
1.61
22307--22372
34
1.9
34
93
0
114
25
16
25
31
1.96
24499--24531
17
1.9
17
93
0
57
33
33
6
27
1.81
24679--24719
21
2.0
21
95
0
73
31
31
14
21
1.94

Tables:   1

The End!