Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010748.1 Corchorus capsularis cultivar CVL-1 contig10769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15541
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28


Found at i:1128 original size:21 final size:21

Alignment explanation


    Indices: 1104--1148  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1094 CCCGACTCCC

                        *        
       1104 CCTGGGCGCCCATGTGGATGG
          1 CCTGGGCGCCCAGGTGGATGG

                *            *   
       1125 CCTGTGCGCCCAGGTGGTTGG
          1 CCTGGGCGCCCAGGTGGATGG

               
       1146 CCT
          1 CCT

       1149 CAGCCCCCAT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.07, C:0.31, G:0.40, T:0.22


Consensus pattern (21 bp):   
CCTGGGCGCCCAGGTGGATGG

Found at i:13003 original size:14 final size:15

Alignment explanation


    Indices: 12980--13008  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

      12970 GAAGAATATG

                           
      12980 AGCACAAAAATAGGA
          1 AGCACAAAAATAGGA

                           
      12995 AGCAC-AAAATAGGA
          1 AGCACAAAAATAGGA

      13009 GATATGGAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    9  0.64
  15    5  0.36

ACGTcount: A:0.59, C:0.14, G:0.21, T:0.07


Consensus pattern (15 bp):   
AGCACAAAAATAGGA
Done.