Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010751.1 Corchorus capsularis cultivar CVL-1 contig10772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71716

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42--73
2
16.0
2
100
0
64
50
0
0
50
1.00
289--343
22
2.4
23
82
11
69
41
16
10
30
1.83
258--343
45
1.9
45
83
4
111
40
15
10
33
1.81
382--425
22
2.0
22
86
0
61
43
13
9
34
1.76
383--431
22
2.2
22
81
3
53
44
16
8
30
1.76
417--474
23
2.6
23
88
2
82
43
15
5
36
1.69
502--772
22
12.7
22
66
16
131
35
16
7
40
1.77
435--666
66
3.6
64
74
10
190
35
14
8
41
1.77
631--705
20
3.6
21
75
10
73
33
16
9
41
1.80
786--985
44
4.5
44
72
12
140
34
14
9
41
1.78
809--956
22
6.8
21
78
5
100
35
14
9
40
1.79
830--958
66
2.0
66
82
3
161
34
15
9
40
1.79
1193--1332
22
6.3
22
74
11
106
40
17
8
33
1.81
1498--1535
19
2.0
20
85
15
53
63
2
5
28
1.30
3142--3201
31
1.9
31
86
6
86
46
3
16
33
1.64
3236--3284
2
23.5
2
79
8
53
46
2
8
42
1.45
4341--4495
70
2.2
70
88
2
222
50
0
11
36
1.43
7630--7668
13
2.9
14
81
11
55
0
20
10
69
1.17
16214--16615
198
2.0
198
100
0
804
36
17
13
32
1.89
17819--17916
31
3.1
31
83
1
115
18
24
23
33
1.97
19148--19202
3
18.3
3
88
7
85
0
32
3
63
1.12
22916--22970
21
2.6
21
83
11
60
32
5
5
56
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23667--23715
23
2.1
23
85
7
64
28
42
22
6
1.77
23705--23744
15
2.6
16
88
4
55
35
40
17
7
1.78
24370--24423
27
2.0
27
100
0
108
51
3
14
29
1.60
24367--24415
14
3.6
14
72
5
55
53
4
14
28
1.59
33978--34010
7
4.7
7
100
0
66
27
42
15
15
1.86
42962--43036
31
2.4
32
82
4
82
33
17
14
34
1.90
43058--43130
31
2.4
30
81
6
92
34
16
19
30
1.94
50526--50552
4
6.8
4
100
0
54
77
0
22
0
0.76
51016--51077
14
4.4
14
74
11
56
27
12
22
37
1.91
51016--51077
28
2.2
28
94
0
106
27
12
22
37
1.91
52176--52212
3
12.3
3
100
0
74
67
0
0
32
0.91
52563--52593
16
2.0
15
93
6
53
35
0
6
58
1.24
53189--53310
61
2.0
61
95
0
217
22
15
14
46
1.83
65879--66021
74
1.9
74
91
0
232
25
18
22
34
1.96
71688--71716
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!