Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010752.1 Corchorus capsularis cultivar CVL-1 contig10773, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58977

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
434--474
2
20.5
2
94
0
64
0
43
0
56
0.99
1545--1640
32
3.0
32
89
0
129
31
25
25
18
1.98
1827--1926
29
3.4
29
84
6
114
44
13
19
24
1.85
13817--13854
19
2.0
19
85
10
51
2
23
2
71
1.12
20089--20125
2
18.5
2
100
0
74
51
0
0
48
1.00
21854--21879
2
13.0
2
100
0
52
50
0
0
50
1.00
25804--25840
2
18.5
2
100
0
74
51
0
0
48
1.00
25840--25874
2
18.0
2
91
5
54
54
45
0
0
0.99
29052--29081
14
2.1
14
93
0
51
40
13
10
36
1.78
31288--31391
50
2.1
50
92
0
172
48
11
25
15
1.78
32024--32081
22
2.6
22
83
0
80
24
32
24
18
1.97
37762--37865
50
2.1
50
94
0
181
49
11
24
15
1.77
39382--39418
2
18.5
2
100
0
74
48
0
0
51
1.00
45294--45691
203
2.0
202
86
3
559
34
17
17
29
1.94
55156--55204
20
2.7
18
84
12
57
46
4
4
44
1.41
55157--55204
22
2.4
19
83
13
53
47
4
2
45
1.33
58823--58866
14
2.9
15
83
13
54
15
29
2
52
1.55
58874--58967
33
2.8
35
78
13
101
13
41
31
12
1.83
58910--58964
17
3.3
16
70
25
51
10
40
34
14
1.81

Tables:   1

The End!