Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010758.1 Corchorus capsularis cultivar CVL-1 contig10779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31759

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2348--2445
49
2.0
49
97
0
187
24
25
12
37
1.90
7223--7247
4
6.2
4
100
0
50
72
0
28
0
0.86
13808--13893
19
4.1
19
72
23
73
15
22
31
31
1.94
13788--13906
47
2.5
47
87
0
175
15
25
29
29
1.96
13970--14021
27
1.9
27
84
0
68
5
23
42
28
1.77
14082--14163
44
1.9
42
90
5
128
26
19
26
26
1.99
14123--14476
110
3.2
109
84
8
380
22
23
28
24
1.99
14163--14485
55
5.9
55
86
8
322
21
24
28
25
1.99
14126--14467
137
2.5
136
85
5
422
22
23
28
24
1.99
14123--14485
29
13.1
29
83
9
391
22
24
28
24
1.99
15208--15436
28
8.8
28
71
18
208
17
15
25
41
1.89
15323--15360
20
1.9
20
100
0
76
10
15
36
36
1.82
15298--15438
48
2.9
48
95
0
255
16
15
29
39
1.89
15371--15409
20
2.0
20
94
0
69
12
15
35
35
1.86
15493--15658
58
2.8
58
82
6
210
16
20
36
27
1.94
16094--16123
15
2.0
15
93
0
51
6
13
30
50
1.67
31660--31704
2
22.0
2
90
4
72
48
0
4
46
1.22

Tables:   1

The End!