Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010759.1 Corchorus capsularis cultivar CVL-1 contig10780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10045
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:56 original size:2 final size:2

Alignment explanation


    Indices: 44--98  Score: 67
    Period size: 2  Copynumber: 27.0  Consensus size: 2

         34 TTATAATTAG

                  *                                *                      
         44 TA TA GA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                               
         86 CT- TA CTA TA TA TA
          1 -TA TA -TA TA TA TA

         99 AAAGTACGAG


Statistics
Matches: 46,  Mismatches: 4, Indels: 6
        0.82            0.07        0.11

Matches are distributed among these distances:
   1    1  0.02
   2   42  0.91
   3    3  0.07

ACGTcount: A:0.47, C:0.05, G:0.02, T:0.45


Consensus pattern (2 bp):   
TA

Found at i:588 original size:18 final size:18

Alignment explanation


    Indices: 565--607  Score: 86
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        555 TGTTAATAAT

                              
        565 TTTCTTTGTGTGGGATGA
          1 TTTCTTTGTGTGGGATGA

                              
        583 TTTCTTTGTGTGGGATGA
          1 TTTCTTTGTGTGGGATGA

                   
        601 TTTCTTT
          1 TTTCTTT

        608 TGTTACTTTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.09, C:0.07, G:0.28, T:0.56


Consensus pattern (18 bp):   
TTTCTTTGTGTGGGATGA
Done.