Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010760.1 Corchorus capsularis cultivar CVL-1 contig10781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16036
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:1476 original size:27 final size:27

Alignment explanation


    Indices: 1438--1493  Score: 103
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1428 TTCCTACCAA

                 *                     
       1438 AAGTATCGAGTCCGGGGAGGATGATAT
          1 AAGTACCGAGTCCGGGGAGGATGATAT

                                       
       1465 AAGTACCGAGTCCGGGGAGGATGATAT
          1 AAGTACCGAGTCCGGGGAGGATGATAT

              
       1492 AA
          1 AA

       1494 CTATCTGTGA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20


Consensus pattern (27 bp):   
AAGTACCGAGTCCGGGGAGGATGATAT

Found at i:9519 original size:6 final size:6

Alignment explanation


    Indices: 9508--9532  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       9498 TGCTTATATA

                                         
       9508 AATTCT AATTCT AATTCT AATTCT A
          1 AATTCT AATTCT AATTCT AATTCT A

       9533 TATATATATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48


Consensus pattern (6 bp):   
AATTCT

Done.