Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010762.1 Corchorus capsularis cultivar CVL-1 contig10783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24135

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1227--1886
63
10.9
62
65
10
281
16
9
54
19
1.69
1282--1336
24
2.3
24
77
0
56
14
5
56
23
1.59
1222--1989
120
6.3
120
86
3
943
16
9
54
19
1.70
1689--1907
57
3.7
56
69
14
138
17
10
54
18
1.70
3077--3110
18
1.9
17
94
5
59
17
5
17
58
1.57
8361--8407
24
2.0
24
95
0
85
17
8
34
40
1.79
9241--9373
63
2.1
64
88
7
198
24
17
27
30
1.97
9270--9373
33
3.3
31
70
26
92
25
16
27
30
1.96
12622--12676
27
2.0
27
100
0
110
21
18
10
49
1.78
12486--12788
162
1.9
162
95
0
552
36
17
12
33
1.87
18585--18625
12
3.5
12
83
6
57
60
2
0
36
1.10
18850--18880
16
1.9
16
93
0
53
9
19
6
64
1.45
19331--19366
16
2.2
17
90
5
56
11
19
5
63
1.46
18806--19766
479
2.0
481
98
0
1847
30
14
10
43
1.80
19817--19857
12
3.5
12
83
6
57
60
2
0
36
1.10
22790--22839
18
2.5
20
84
9
59
16
6
52
26
1.66
22905--22982
9
8.7
9
75
10
61
25
2
44
26
1.67
22893--22954
18
3.4
18
72
16
65
25
4
41
27
1.75
22893--22963
36
2.0
36
91
0
115
26
4
42
26
1.74
22914--22978
27
2.4
27
97
0
121
26
3
44
26
1.69
22914--22988
27
2.8
27
91
0
105
25
2
46
25
1.66

Tables:   1

The End!