genome.fa.s10765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010765.1 Corchorus capsularis cultivar CVL-1 contig10786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60906

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--36	2	18.0	2	100	0	72	50	0	0	50	1.00
5421--5482	19	3.2	19	77	11	72	64	22	0	12	1.27
5421--5482	13	4.8	12	74	20	54	64	22	0	12	1.27
5427--5482	26	2.2	26	84	12	71	64	23	0	12	1.27
6658--6727	31	2.3	31	100	0	140	28	27	15	28	1.96
7182--7228	23	2.0	23	83	0	58	53	2	42	2	1.25
8395--8472	41	1.9	41	92	5	131	50	12	3	33	1.59
9253--9335	32	2.5	33	96	1	150	53	18	0	28	1.45
13712--13774	27	2.4	26	89	5	101	50	22	14	12	1.76
14327--14356	15	2.1	15	93	6	53	6	36	6	50	1.55
15476--15527	3	17.3	3	95	0	95	69	0	0	30	0.89
26292--26339	21	2.3	21	85	0	60	29	10	18	41	1.84
26852--26897	23	2.1	24	84	15	64	28	4	4	63	1.33
28208--28241	4	8.5	4	100	0	68	23	0	0	76	0.79
28686--28743	21	2.9	19	79	5	62	32	12	24	31	1.91
28794--28830	19	1.9	19	94	0	65	35	13	35	16	1.88
29751--29818	12	5.5	13	86	8	97	35	14	23	26	1.94
29751--29818	25	2.7	25	90	0	109	35	14	23	26	1.94
31093--31118	10	2.6	10	100	0	52	30	7	23	38	1.83
31229--31267	12	3.6	12	74	25	50	30	15	28	25	1.96
34841--34866	2	13.0	2	100	0	52	50	0	0	50	1.00
34541--35157	320	1.9	323	94	1	1096	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37284--37649	156	2.3	155	77	8	359	34	19	15	30	1.92

Tables:   1

The End!