Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010766.1 Corchorus capsularis cultivar CVL-1 contig10787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11767
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--35  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

                                                                
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         36 TTTATAGAAG


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:2781 original size:11 final size:12

Alignment explanation


    Indices: 2756--2794  Score: 64
    Period size: 11  Copynumber: 3.4  Consensus size: 12

       2746 ACACCCTTAG

                        
       2756 GAAAAACTAGAA
          1 GAAAAACTAGAA

                        
       2768 GAAAAACTAG-A
          1 GAAAAACTAGAA

                        
       2779 GAAAAA-TAGAA
          1 GAAAAACTAGAA

                 
       2790 GAAAA
          1 GAAAA

       2795 GAAATTGTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  10    3  0.12
  11   13  0.50
  12   10  0.38

ACGTcount: A:0.69, C:0.05, G:0.18, T:0.08


Consensus pattern (12 bp):   
GAAAAACTAGAA
Done.