Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010767.1 Corchorus capsularis cultivar CVL-1 contig10788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12907

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7827--7859
14
2.3
15
89
5
50
78
9
12
0
0.95
10351--10522
22
7.8
22
65
11
75
34
11
11
43
1.75
10514--10568
22
2.4
23
81
3
67
38
18
12
30
1.88
10620--10912
22
13.5
22
69
9
93
36
14
8
39
1.78
10637--10721
23
3.7
23
84
1
100
38
15
8
37
1.77
10748--10847
44
2.3
44
82
3
121
33
15
10
42
1.80
10811--10911
44
2.3
42
80
9
121
39
10
10
38
1.76
10903--10969
19
3.5
19
87
2
98
23
22
11
41
1.87
11075--11199
22
5.7
22
74
9
94
35
13
9
41
1.77
11050--11220
44
3.9
43
78
7
148
36
12
9
41
1.76
11075--11245
66
2.6
65
78
8
170
36
13
8
40
1.76
11095--11220
22
5.7
22
72
7
85
37
12
9
40
1.76
11050--11216
88
1.9
88
82
7
214
35
13
9
41
1.77
11138--11243
22
4.8
23
75
10
80
39
12
8
39
1.73
11479--11663
22
8.3
21
80
7
145
38
19
9
32
1.84
11787--11818
6
5.3
6
100
0
64
15
0
34
50
1.45
11944--12008
30
2.1
31
94
2
114
47
4
20
27
1.69
12158--12186
10
2.7
11
89
10
51
48
0
6
44
1.29

Tables:   1

The End!