genome.fa.s10772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010772.1 Corchorus capsularis cultivar CVL-1 contig10793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38500

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771--2349	35	16.7	34	81	9	454	33	19	9	38	1.83
1879--1927	14	3.3	14	73	15	53	34	22	8	34	1.84
1771--2314	105	5.2	105	80	8	553	33	18	9	38	1.83
2116--2167	27	1.9	27	100	0	104	32	17	7	42	1.77
2144--2348	36	5.7	36	87	5	297	30	20	8	39	1.83
2141--2360	72	3.0	74	89	3	331	30	20	8	39	1.83
2875--2937	32	1.9	33	87	3	92	42	14	3	39	1.61
4700--4732	2	16.5	2	100	0	66	51	0	0	48	1.00
5701--5846	78	1.9	78	80	0	175	31	19	25	23	1.98
8645--8747	24	4.4	24	74	9	95	25	31	20	23	1.98
15596--15682	22	3.9	22	78	15	97	34	12	11	41	1.79
15729--15854	22	5.7	22	75	10	105	37	18	8	35	1.82
15890--16051	22	7.3	22	77	6	105	37	20	9	32	1.85
18164--18192	14	2.1	14	100	0	58	48	6	13	31	1.69
21836--21869	3	11.3	3	100	0	68	32	0	0	67	0.91
24828--24929	47	2.2	47	96	0	186	41	18	9	30	1.83
26942--26984	19	2.3	19	91	0	68	93	2	2	2	0.48
26941--26977	1	37.0	1	94	0	65	97	0	2	0	0.18
29696--29724	11	2.6	11	100	0	58	44	0	17	37	1.49
31578--31648	37	1.9	37	91	0	115	38	16	7	38	1.76
31677--31736	31	1.9	31	96	0	111	38	15	10	36	1.80
34044--34114	37	1.9	37	91	0	115	38	16	7	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34143--34202	31	1.9	31	96	0	111	38	15	10	36	1.80
34301--34325	12	2.1	12	100	0	50	8	32	12	48	1.69

Tables:   1

The End!