Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010776.1 Corchorus capsularis cultivar CVL-1 contig10797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41691

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1918--2054
72
1.9
72
83
5
179
42
20
7
29
1.79
3598--3640
11
3.9
11
90
0
68
46
6
4
41
1.51
3594--3640
22
2.1
22
96
0
85
46
6
4
42
1.48
4456--4482
13
2.1
13
100
0
54
92
0
0
7
0.38
6571--6727
64
2.4
65
82
7
187
37
17
5
39
1.72
8116--8295
68
2.6
67
86
9
224
33
17
6
42
1.75
8326--8360
2
17.5
2
100
0
70
0
48
0
51
1.00
11381--11483
22
4.6
22
76
10
93
41
14
10
33
1.80
11549--11810
22
12.0
22
70
13
148
34
14
11
39
1.81
11553--11674
44
2.8
44
88
0
172
36
12
13
38
1.82
11549--11718
66
2.6
67
80
12
183
35
13
11
39
1.81
11658--11756
43
2.3
44
80
7
112
34
13
12
40
1.81
11879--11929
22
2.3
22
93
0
84
39
17
13
29
1.88
12499--13079
22
26.0
22
69
15
255
39
9
15
35
1.80
12550--12760
115
1.9
110
80
8
246
39
9
15
35
1.81
15128--15352
22
10.6
21
73
13
142
40
7
16
35
1.77
15174--15329
43
3.8
40
78
11
131
40
8
15
35
1.77
16696--16760
29
2.2
31
83
5
80
30
15
18
35
1.92
16824--17083
22
11.8
22
67
16
119
38
11
14
35
1.83
16824--17017
44
4.3
46
73
13
138
38
12
13
35
1.83
16959--17162
22
9.4
22
71
14
97
37
7
16
38
1.77
17132--17181
22
2.3
22
83
13
59
44
8
12
36
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18369--18407
15
2.6
15
80
15
53
64
2
5
28
1.28
18741--18852
52
2.2
52
93
0
188
29
8
14
48
1.72
18987--19015
2
14.5
2
100
0
58
51
0
0
48
1.00
21354--21385
2
16.0
2
93
0
55
46
0
3
50
1.17
21360--21937
220
2.6
221
84
8
739
41
17
13
27
1.87
24877--25236
177
2.0
180
91
2
582
47
13
11
26
1.77
37042--37075
18
1.9
17
94
5
59
50
23
8
17
1.74
37375--37470
48
2.0
48
95
0
174
38
27
10
23
1.87
38783--38868
45
2.0
43
90
4
136
29
10
19
40
1.85
39197--39237
22
1.9
21
85
5
55
24
9
7
58
1.55

Tables:   1

The End!