genome.fa.s10779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010779.1 Corchorus capsularis cultivar CVL-1 contig10800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62723

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660--698	19	2.1	19	95	0	69	20	15	17	46	1.84
3109--3138	1	30.0	1	100	0	60	100	0	0	0	0.00
3155--3250	21	4.8	19	68	14	68	29	28	16	26	1.97
3153--3275	40	3.0	40	88	4	176	30	26	17	25	1.97
3173--3275	21	5.0	21	70	11	79	32	27	17	23	1.97
5714--5774	24	2.5	24	81	0	77	68	4	13	13	1.35
9752--9788	15	2.5	15	90	0	56	37	0	0	62	0.96
10178--10864	110	6.2	109	80	6	688	28	19	18	33	1.95
10178--10904	222	3.3	220	80	6	693	29	19	18	33	1.95
10179--10884	332	2.1	330	88	3	1046	29	18	18	33	1.95
19240--19310	31	2.3	31	90	0	106	33	29	22	14	1.93
20286--20323	2	19.0	2	100	0	76	50	0	0	50	1.00
24163--24226	32	2.0	32	87	6	94	51	15	9	23	1.72
26935--27007	36	2.0	37	89	2	112	43	23	17	15	1.87
27294--27338	23	1.9	24	90	4	74	46	20	0	33	1.51
27294--27344	24	2.1	24	85	7	68	49	17	0	33	1.47
27479--27533	23	2.3	23	81	9	58	56	0	9	34	1.31
29840--30002	31	5.5	31	74	12	101	15	22	27	34	1.95
29913--29960	22	2.3	21	80	20	57	16	16	25	41	1.89
33443--36565	331	9.5	330	78	7	3133	35	17	14	33	1.90
33443--36348	647	4.4	650	88	3	3997	35	17	14	32	1.90
36623--36688	27	2.4	28	82	7	82	50	1	4	43	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36610--36789	94	1.9	96	88	2	274	54	4	7	33	1.48
36843--36870	7	4.0	7	100	0	56	42	0	14	42	1.45
37225--37282	29	1.9	31	93	6	102	46	3	18	31	1.66
40585--40627	9	4.6	9	80	8	50	20	9	23	46	1.79
43763--44368	49	12.4	48	81	4	505	22	30	16	30	1.96
43921--44277	146	2.4	146	84	5	479	22	33	15	28	1.95
43763--44326	244	2.3	242	80	6	602	23	30	16	29	1.96
45779--45863	41	2.1	41	95	0	152	21	15	27	36	1.93
52980--53008	6	4.8	6	100	0	58	17	13	0	68	1.20
53306--53362	27	2.1	27	90	6	89	36	8	0	54	1.32
54197--54353	76	2.1	75	79	7	165	37	5	8	47	1.59
60573--60679	31	3.5	30	68	16	78	32	18	20	28	1.96
60637--60736	31	3.3	31	68	16	82	37	20	18	25	1.94
60579--60737	60	2.7	60	86	0	219	35	18	18	27	1.95
60769--60937	31	5.5	31	75	12	143	23	21	19	34	1.96
62675--62723	2	24.5	2	100	0	98	48	0	51	0	1.00

Tables:   1

The End!