Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010782.1 Corchorus capsularis cultivar CVL-1 contig10803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70124

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
867--922
13
4.2
13
75
4
58
51
5
3
39
1.42
1210--1269
31
1.9
31
89
0
93
30
18
5
46
1.70
2316--2394
29
2.6
30
84
4
88
30
13
11
44
1.80
2523--2596
31
2.4
31
82
10
82
43
9
16
31
1.79
2938--3008
30
2.3
31
87
2
99
50
12
14
22
1.76
2938--3017
31
2.6
30
88
2
106
46
11
13
28
1.78
3890--3923
17
1.9
18
88
5
52
26
0
8
64
1.22
11476--11563
44
2.0
44
97
0
167
42
25
7
25
1.82
12232--12382
72
2.1
72
83
4
198
43
27
7
22
1.79
15694--15723
15
2.1
15
93
6
53
76
6
6
10
1.15
16184--16218
18
1.9
18
88
0
52
11
2
0
85
0.69
22243--22280
11
3.5
11
89
10
51
39
0
2
57
1.12
26547--26599
28
2.0
28
85
14
76
47
0
3
49
1.19
26542--26602
14
4.0
17
76
23
57
45
0
4
49
1.23
32430--32884
149
3.0
148
81
7
506
40
19
14
25
1.90
35379--35412
2
17.5
2
93
6
61
50
0
0
50
1.00
35380--35412
17
1.9
17
100
0
66
51
0
0
48
1.00
36965--37006
20
2.1
20
95
0
75
11
26
14
47
1.78
36968--37022
20
2.8
20
88
0
74
12
23
16
47
1.81
39681--39895
107
2.0
107
95
0
385
35
23
10
30
1.89
40677--40749
38
1.9
38
88
0
110
42
8
15
34
1.76
40656--40772
60
1.9
61
82
1
146
41
7
14
35
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40637--41086
22
20.6
22
69
9
186
38
10
16
35
1.82
40715--41007
111
2.6
109
74
10
238
35
9
17
36
1.83
41056--41210
65
2.4
65
87
3
217
44
7
12
35
1.71
41111--41163
22
2.4
22
83
0
70
47
7
9
35
1.64
44974--45038
32
2.0
32
100
0
130
36
36
6
20
1.77
52743--52779
16
2.3
16
95
0
65
21
5
27
45
1.73
56406--56434
14
2.1
14
100
0
58
20
6
24
48
1.74
56871--56896
12
2.2
12
100
0
52
23
15
7
53
1.67
69330--69356
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!