Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010783.1 Corchorus capsularis cultivar CVL-1 contig10804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40002

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10001--10029
10
3.0
10
95
5
51
51
0
0
48
1.00
11578--11603
3
8.7
3
100
0
52
30
0
0
69
0.89
12482--12567
42
2.0
43
81
2
102
32
18
13
34
1.90
12989--13014
10
2.6
10
100
0
52
92
0
7
0
0.39
17138--17166
13
2.2
13
100
0
58
62
10
6
20
1.50
20094--20158
30
2.1
31
85
2
87
29
16
3
50
1.60
20595--20632
20
1.9
20
100
0
76
26
5
0
68
1.11
20597--20640
20
2.2
20
83
0
52
36
4
0
59
1.18
21134--21215
22
3.7
22
82
12
96
54
1
1
42
1.15
21182--21216
10
3.3
10
85
14
52
51
0
0
48
1.00
21742--21779
19
2.0
20
85
15
53
28
5
2
63
1.30
21945--22071
22
5.6
22
74
10
96
36
10
14
38
1.81
22013--22064
24
2.2
24
86
6
70
34
13
15
36
1.87
22060--22107
22
2.2
22
88
0
69
20
6
22
50
1.71
22073--22117
22
2.2
20
84
8
54
11
6
20
62
1.50
22166--22557
22
17.6
22
68
18
113
40
9
15
34
1.79
22411--22538
66
1.9
66
82
3
159
43
10
11
34
1.75
22391--22554
66
2.5
64
74
13
145
43
9
11
35
1.73
22681--23992
22
59.7
22
66
16
293
39
9
15
35
1.80
22662--23992
44
30.8
43
67
14
408
39
9
15
35
1.80
23104--23220
21
5.4
22
77
10
89
41
8
11
37
1.73
23625--23708
23
3.7
23
85
7
84
39
10
13
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22166--23707
752
2.0
759
93
3
2634
39
9
15
35
1.80
24390--24423
17
2.0
17
94
0
59
32
17
5
44
1.73
31741--31768
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!