Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010785.1 Corchorus capsularis cultivar CVL-1 contig10806, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8717
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27


Found at i:2919 original size:25 final size:25

Alignment explanation


    Indices: 2891--2965  Score: 150
    Period size: 25  Copynumber: 3.0  Consensus size: 25

       2881 TCAATTCCGC

                                     
       2891 GAGTTCTGCGATTTCCAAGAGGGGA
          1 GAGTTCTGCGATTTCCAAGAGGGGA

                                     
       2916 GAGTTCTGCGATTTCCAAGAGGGGA
          1 GAGTTCTGCGATTTCCAAGAGGGGA

                                     
       2941 GAGTTCTGCGATTTCCAAGAGGGGA
          1 GAGTTCTGCGATTTCCAAGAGGGGA

       2966 AAGTCAAGAT


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   50  1.00

ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24


Consensus pattern (25 bp):   
GAGTTCTGCGATTTCCAAGAGGGGA
Done.