Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010787.1 Corchorus capsularis cultivar CVL-1 contig10808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27679

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--62
22
1.9
22
90
0
66
45
9
19
26
1.80
68--175
22
4.8
22
77
6
92
40
9
13
36
1.77
70--176
23
4.7
23
80
2
92
40
9
14
36
1.78
14--175
45
3.8
44
74
12
129
41
9
14
34
1.78
160--206
22
2.1
22
88
0
67
34
6
17
42
1.74
167--215
22
2.2
22
88
3
71
36
8
14
40
1.75
248--315
22
3.0
22
76
4
64
32
11
16
39
1.84
5136--5169
17
1.9
17
88
5
50
38
8
11
41
1.73
5996--6060
19
3.1
22
68
17
66
41
27
3
27
1.71
6114--6152
17
2.3
17
86
0
60
48
15
7
28
1.72
7310--7357
22
2.3
20
86
10
62
39
25
16
18
1.91
7277--7379
53
1.9
53
86
0
143
35
28
18
17
1.94
7329--7427
31
3.2
31
80
0
108
34
27
19
19
1.95
9886--9943
30
1.9
30
92
0
98
37
13
15
32
1.87
10757--10781
11
2.3
11
100
0
50
24
16
8
52
1.70
10884--10918
7
5.0
7
96
0
61
42
40
14
2
1.60
16339--16383
21
2.1
21
87
0
63
6
15
17
60
1.56
21730--21816
32
2.8
31
77
3
93
36
26
21
14
1.93
21828--21891
30
2.1
30
100
0
128
14
26
23
35
1.93
21828--21880
18
3.3
18
65
29
55
13
24
22
39
1.90

Tables:   1

The End!