Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010790.1 Corchorus capsularis cultivar CVL-1 contig10811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3537
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Found at i:3018 original size:2 final size:2

Alignment explanation


    Indices: 2999--3039  Score: 61
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       2989 AACCCCTTGG

                                                                          
       2999 TA TA T- TA TA -A TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
       3038 TA
          1 TA

       3040 AGTTGTAAAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 6
        0.86            0.00        0.14

Matches are distributed among these distances:
   1    3  0.08
   2   33  0.92

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.