genome.fa.s10796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010796.1 Corchorus capsularis cultivar CVL-1 contig10817, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7198

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2169--2336	38	4.4	38	87	3	232	48	6	16	28	1.71
2169--2399	76	3.1	76	82	9	253	48	6	16	28	1.71
2446--2562	21	5.6	20	71	13	92	52	5	22	20	1.66
2434--2563	43	3.1	42	83	3	154	53	4	22	19	1.63
2423--2586	43	3.8	42	79	7	152	54	4	21	20	1.61
2434--2622	85	2.2	84	80	10	190	54	5	19	20	1.64
2627--2688	32	2.1	29	82	14	74	59	6	19	14	1.56
2654--2728	20	3.7	20	68	15	55	58	5	21	14	1.56
2692--2805	36	3.3	36	80	4	128	56	5	21	17	1.60
3780--3838	14	4.2	14	72	8	57	18	16	0	64	1.29
3791--3860	14	5.0	14	71	13	54	18	18	1	61	1.42
3780--4047	42	6.5	42	76	8	160	22	20	2	55	1.54
3849--4068	20	10.6	22	75	12	153	22	21	2	54	1.56
3842--4044	43	4.9	42	79	14	188	23	21	2	53	1.58
3984--4035	13	3.9	14	77	7	54	25	21	5	48	1.72
3977--4082	26	3.9	27	76	14	87	19	21	3	54	1.60
3970--4099	40	3.2	40	78	8	131	19	22	3	55	1.57
4074--4151	29	2.7	27	75	7	75	19	24	1	55	1.51
4097--4182	36	2.5	34	88	3	118	18	23	2	55	1.54
4165--4219	14	4.1	14	79	6	51	25	23	5	45	1.74
4195--4284	20	4.4	20	73	12	85	27	20	1	51	1.54
4301--4355	15	3.9	14	78	7	58	18	18	5	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4301--4373	20	3.5	20	83	3	83	19	19	5	56	1.61

Tables:   1

The End!