Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010797.1 Corchorus capsularis cultivar CVL-1 contig10818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5272
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1266 original size:14 final size:14

Alignment explanation


    Indices: 1247--1276  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1237 CAACAAACAA

                          
       1247 GGAGTCAATGCCGT
          1 GGAGTCAATGCCGT

                          
       1261 GGAGTCAATGCCGT
          1 GGAGTCAATGCCGT

              
       1275 GG
          1 GG

       1277 GATTACAAGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20


Consensus pattern (14 bp):   
GGAGTCAATGCCGT
Done.