Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010801.1 Corchorus capsularis cultivar CVL-1 contig10822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54001

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10952--10978
13
2.1
13
100
0
54
14
14
48
22
1.81
13295--13337
21
2.1
20
82
4
50
13
27
18
39
1.89
20575--20629
26
2.1
26
100
0
110
14
10
18
56
1.67
24245--24279
6
5.8
6
96
0
52
68
0
8
22
1.16
24955--24998
17
2.4
19
81
7
56
72
0
25
2
0.96
25030--25180
45
3.4
45
86
6
216
37
7
19
36
1.79
25902--25953
20
2.7
19
76
23
56
78
0
19
1
0.84
25902--25965
27
2.4
26
77
12
67
78
0
18
3
0.89
26249--26333
26
3.3
26
64
18
70
35
16
10
37
1.83
26239--26387
50
3.0
50
95
0
262
34
16
12
36
1.86
26275--26357
24
3.4
24
64
18
62
33
15
12
38
1.85
27091--27439
69
5.0
70
89
3
494
26
27
18
27
1.98
27652--27681
3
10.3
3
92
7
53
70
0
30
0
0.88
30384--30455
21
3.5
21
67
24
62
19
9
20
50
1.76
36412--36516
33
3.2
32
79
5
120
25
9
20
44
1.81
36535--36683
33
4.5
33
93
0
244
30
10
16
42
1.82
49971--50034
26
2.5
26
82
5
76
31
15
7
45
1.75

Tables:   1

The End!