Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010806.1 Corchorus capsularis cultivar CVL-1 contig10827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61468

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2435--2496
10
5.9
10
74
10
61
6
22
46
24
1.75
7028--7063
2
18.0
2
88
0
54
50
0
2
47
1.15
10469--10527
30
2.0
30
90
6
93
22
30
16
30
1.96
10870--10988
33
3.6
33
90
0
175
42
17
9
31
1.81
10870--11011
66
2.2
66
81
2
160
42
19
9
28
1.81
11004--11108
33
3.2
33
77
8
124
47
20
8
23
1.77
15282--15307
2
13.0
2
100
0
52
50
0
0
50
1.00
22621--22669
19
2.6
19
83
0
62
40
2
0
57
1.10
24306--24813
30
16.7
30
90
2
647
34
17
17
30
1.94
24306--24846
183
3.0
183
84
2
685
33
17
17
30
1.94
24306--24815
153
3.4
149
84
3
597
34
17
17
30
1.94
29387--29505
33
3.6
33
93
0
193
42
17
9
31
1.81
29519--29592
33
2.2
32
76
9
78
44
21
10
22
1.83
33533--33599
32
2.2
31
89
5
100
22
22
11
43
1.86
33643--33679
3
12.3
3
100
0
74
32
0
0
67
0.91
37743--37909
72
2.3
72
91
0
271
39
19
7
32
1.81
41791--41919
64
2.0
63
93
4
222
41
8
17
33
1.79
45486--45534
25
2.0
25
91
0
80
8
16
36
38
1.78
50305--50514
54
3.9
54
83
3
219
25
26
11
36
1.90
50330--50514
52
3.5
52
85
5
219
24
28
11
35
1.90
50554--50682
53
2.4
54
90
5
208
28
26
13
31
1.93
51909--52060
74
2.1
74
94
1
270
23
15
13
48
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52234--52262
14
2.1
14
100
0
58
24
20
13
41
1.89
61285--61443
48
3.4
48
81
6
148
20
22
19
37
1.94

Tables:   1

The End!