Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010808.1 Corchorus capsularis cultivar CVL-1 contig10829, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3495
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:1244 original size:17 final size:17

Alignment explanation


    Indices: 1222--1254  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1212 CTCATAGTAC

                             
       1222 CTAGGTAGTATGAGGTA
          1 CTAGGTAGTATGAGGTA

                            
       1239 CTAGGTAGTATGAGGT
          1 CTAGGTAGTATGAGGT

       1255 GAAAGGCTGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.27, C:0.06, G:0.36, T:0.30


Consensus pattern (17 bp):   
CTAGGTAGTATGAGGTA
Done.