Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010814.1 Corchorus capsularis cultivar CVL-1 contig10835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87040

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1759--1833
27
2.8
27
81
4
89
46
22
14
16
1.83
6242--6325
13
6.3
13
75
24
86
45
2
25
27
1.66
6242--6325
39
2.1
40
95
4
152
45
2
25
27
1.66
6234--6333
21
4.6
21
69
28
75
44
2
23
31
1.65
11271--11356
45
1.9
45
97
0
163
33
18
22
25
1.96
37023--37077
21
2.6
21
91
5
85
12
36
40
10
1.79
37441--37474
10
3.4
10
91
0
50
11
0
2
85
0.71
38463--38545
30
2.8
30
87
3
105
18
25
19
37
1.94
46750--46850
46
2.2
46
87
0
148
24
10
22
41
1.86
48470--48582
44
2.6
44
95
1
201
26
14
26
32
1.94
50181--50222
19
2.2
19
100
0
84
23
35
14
26
1.93
55599--55633
18
2.0
17
88
5
52
8
34
40
17
1.80
55629--55669
22
2.0
22
90
9
68
21
24
19
34
1.97
55890--55966
30
2.5
30
89
2
109
27
9
28
35
1.87
55901--55984
30
2.8
30
82
7
82
23
9
26
40
1.85
60325--60356
2
15.5
2
93
6
55
50
3
46
0
1.17
64016--64061
25
2.0
22
84
16
58
60
13
8
17
1.56
81081--81176
48
2.0
48
95
0
174
30
13
37
18
1.90
84135--84208
22
3.3
21
74
23
71
9
24
45
20
1.80
86023--86670
319
2.0
319
99
0
1287
29
21
18
31
1.97

Tables:   1

The End!