Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010818.1 Corchorus capsularis cultivar CVL-1 contig10839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6537
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3593 original size:29 final size:30

Alignment explanation


    Indices: 3528--3593  Score: 82
    Period size: 29  Copynumber: 2.2  Consensus size: 30

       3518 CGATTGGAAG

                                          
       3528 AGAAGTCGACTAAGCAAAGTCGACTAGGGA
          1 AGAAGTCGACTAAGCAAAGTCGACTAGGGA

                    *                    *  
       3558 AGCAAGTCTAC-AAGC-AAGTCGACTAGTTGA
          1 AG-AAGTCGACTAAGCAAAGTCGACTAG-GGA

                  
       3588 AGAAGT
          1 AGAAGT

       3594 AAAGTCGATT


Statistics
Matches: 32,  Mismatches: 2, Indels: 5
        0.82            0.05        0.13

Matches are distributed among these distances:
  29   15  0.47
  30   10  0.31
  31    7  0.22

ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17


Consensus pattern (30 bp):   
AGAAGTCGACTAAGCAAAGTCGACTAGGGA
Done.